The Helmholtz Network for Bioinformatics: An integrative web portal for bioinformatics resources

Torsten Crass; I. Antes; R. Basekow; P. Bork; C. Buning; M. Christensen; H. Claußen; C. Ebeling; P. Ernst; V. Gailus-Durner; K. H. Glatting; R. Gohla; F. Gößling; K. Grote; K. Heidtke; A. Hermann; S. O'Keeffe; O. Kießlich; S. Kolibal; J. O. Korbel; T. Lengauer; I. Liebich; M. van der Linden; H. Luz; K. Meissner; C. von Mering; H. T. Mevissen; H. W. Mewes; H. Michael; M. Mokrejs; T. Müller; H. Pospisil; M. Rarey; J. G. Reich; R. Schneider; D. Schomburg; S. Schulze-Kremer; K. Schwarzer; I. Sommer; S. Springstubbe; S. Suhai; G. Thoppae; M. Vingron; J. Warsfmann; T. Werner; D. Wetzler; E. Wingender; R. Zimmer

doi:10.1093/bioinformatics/btg398

The Helmholtz Network for Bioinformatics: An integrative web portal for bioinformatics resources

Torsten Crass^*
, I. Antes
, R. Basekow
, P. Bork
, C. Buning
, M. Christensen
, H. Claußen
, C. Ebeling
, P. Ernst
, V. Gailus-Durner
, K. H. Glatting
, R. Gohla
, F. Gößling
, K. Grote
, K. Heidtke
, A. Hermann
, S. O'Keeffe
, O. Kießlich
, S. Kolibal
, J. O. Korbel

T. Lengauer, I. Liebich, M. van der Linden, H. Luz, K. Meissner, C. von Mering, H. T. Mevissen, H. W. Mewes, H. Michael, M. Mokrejs, T. Müller, H. Pospisil, M. Rarey, J. G. Reich, R. Schneider, D. Schomburg, S. Schulze-Kremer, K. Schwarzer, I. Sommer, S. Springstubbe, S. Suhai, G. Thoppae, M. Vingron, J. Warsfmann, T. Werner, D. Wetzler, E. Wingender, R. Zimmer

^*Corresponding author for this work

University of Göttingen
Max Planck Institute for Informatics
Genomforschung GmbH
European Molecular Biology Laboratory
Max-Delbrück-Center for Molecular Medicine
Fraunhofer Institute for Algorithms and Scientific Computing SCAI
University of Cologne
German Cancer Research Center
Helmholtz Zentrum München German Research Center for Environmental Health
Helmholtz Centre for Infection Research
Max Planck Institute for Molecular Genetics
Institute for Bioinformatics
Ludwig Maximilian University of Munich

Research output: Contribution to journal › Article › peer-review

8 Scopus citations

Abstract

Summary: The Helmholtz Network for Bioinformatics (HNB) is a joint venture of eleven German bioinformatics research groups that offers convenient access to numerous bioinformatics resources through a single web portal. The 'Guided Solution Finder' which is available through the HNB portal helps users to locate the appropriate resources to answer their queries by employing a detailed, tree-like questionnaire. Furthermore, automated complex tool cascades ('tasks'), involving resources located on different servers, have been implemented, allowing users to perform comprehensive data analyses without the requirement of further manual intervention for data transfer and re-formatting. Currently, automated cascades for the analysis of regulatory DNA segments as well as for the prediction of protein functional properties are provided.

Original language	English
Pages (from-to)	268-270
Number of pages	3
Journal	Bioinformatics
Volume	20
Issue number	2
DOIs	https://doi.org/10.1093/bioinformatics/btg398
State	Published - 22 Jan 2004
Externally published	Yes

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Crass, T., Antes, I., Basekow, R., Bork, P., Buning, C., Christensen, M., Claußen, H., Ebeling, C., Ernst, P., Gailus-Durner, V., Glatting, K. H., Gohla, R., Gößling, F., Grote, K., Heidtke, K., Hermann, A., O'Keeffe, S., Kießlich, O., Kolibal, S., ... Zimmer, R. (2004). The Helmholtz Network for Bioinformatics: An integrative web portal for bioinformatics resources. Bioinformatics, 20(2), 268-270. https://doi.org/10.1093/bioinformatics/btg398

@article{0f44d077357b44cab06186b42fdafb79,

title = "The Helmholtz Network for Bioinformatics: An integrative web portal for bioinformatics resources",

abstract = "Summary: The Helmholtz Network for Bioinformatics (HNB) is a joint venture of eleven German bioinformatics research groups that offers convenient access to numerous bioinformatics resources through a single web portal. The 'Guided Solution Finder' which is available through the HNB portal helps users to locate the appropriate resources to answer their queries by employing a detailed, tree-like questionnaire. Furthermore, automated complex tool cascades ('tasks'), involving resources located on different servers, have been implemented, allowing users to perform comprehensive data analyses without the requirement of further manual intervention for data transfer and re-formatting. Currently, automated cascades for the analysis of regulatory DNA segments as well as for the prediction of protein functional properties are provided.",

author = "Torsten Crass and I. Antes and R. Basekow and P. Bork and C. Buning and M. Christensen and H. Clau{\ss}en and C. Ebeling and P. Ernst and V. Gailus-Durner and Glatting, \{K. H.\} and R. Gohla and F. G{\"o}{\ss}ling and K. Grote and K. Heidtke and A. Hermann and S. O'Keeffe and O. Kie{\ss}lich and S. Kolibal and Korbel, \{J. O.\} and T. Lengauer and I. Liebich and \{van der Linden\}, M. and H. Luz and K. Meissner and \{von Mering\}, C. and Mevissen, \{H. T.\} and Mewes, \{H. W.\} and H. Michael and M. Mokrejs and T. M{\"u}ller and H. Pospisil and M. Rarey and Reich, \{J. G.\} and R. Schneider and D. Schomburg and S. Schulze-Kremer and K. Schwarzer and I. Sommer and S. Springstubbe and S. Suhai and G. Thoppae and M. Vingron and J. Warsfmann and T. Werner and D. Wetzler and E. Wingender and R. Zimmer",

year = "2004",

month = jan,

day = "22",

doi = "10.1093/bioinformatics/btg398",

language = "English",

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pages = "268--270",

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Crass, T, Antes, I, Basekow, R, Bork, P, Buning, C, Christensen, M, Claußen, H, Ebeling, C, Ernst, P, Gailus-Durner, V, Glatting, KH, Gohla, R, Gößling, F, Grote, K, Heidtke, K, Hermann, A, O'Keeffe, S, Kießlich, O, Kolibal, S, Korbel, JO, Lengauer, T, Liebich, I, van der Linden, M, Luz, H, Meissner, K, von Mering, C, Mevissen, HT, Mewes, HW, Michael, H, Mokrejs, M, Müller, T, Pospisil, H, Rarey, M, Reich, JG, Schneider, R, Schomburg, D, Schulze-Kremer, S, Schwarzer, K, Sommer, I, Springstubbe, S, Suhai, S, Thoppae, G, Vingron, M, Warsfmann, J, Werner, T, Wetzler, D, Wingender, E & Zimmer, R 2004, 'The Helmholtz Network for Bioinformatics: An integrative web portal for bioinformatics resources', Bioinformatics, vol. 20, no. 2, pp. 268-270. https://doi.org/10.1093/bioinformatics/btg398

TY - JOUR

T1 - The Helmholtz Network for Bioinformatics

T2 - An integrative web portal for bioinformatics resources

AU - Crass, Torsten

AU - Antes, I.

AU - Basekow, R.

AU - Bork, P.

AU - Buning, C.

AU - Christensen, M.

AU - Claußen, H.

AU - Ebeling, C.

AU - Ernst, P.

AU - Gailus-Durner, V.

AU - Glatting, K. H.

AU - Gohla, R.

AU - Gößling, F.

AU - Grote, K.

AU - Heidtke, K.

AU - Hermann, A.

AU - O'Keeffe, S.

AU - Kießlich, O.

AU - Kolibal, S.

AU - Korbel, J. O.

AU - Lengauer, T.

AU - Liebich, I.

AU - van der Linden, M.

AU - Luz, H.

AU - Meissner, K.

AU - von Mering, C.

AU - Mevissen, H. T.

AU - Mewes, H. W.

AU - Michael, H.

AU - Mokrejs, M.

AU - Müller, T.

AU - Pospisil, H.

AU - Rarey, M.

AU - Reich, J. G.

AU - Schneider, R.

AU - Schomburg, D.

AU - Schulze-Kremer, S.

AU - Schwarzer, K.

AU - Sommer, I.

AU - Springstubbe, S.

AU - Suhai, S.

AU - Thoppae, G.

AU - Vingron, M.

AU - Warsfmann, J.

AU - Werner, T.

AU - Wetzler, D.

AU - Wingender, E.

AU - Zimmer, R.

PY - 2004/1/22

Y1 - 2004/1/22

N2 - Summary: The Helmholtz Network for Bioinformatics (HNB) is a joint venture of eleven German bioinformatics research groups that offers convenient access to numerous bioinformatics resources through a single web portal. The 'Guided Solution Finder' which is available through the HNB portal helps users to locate the appropriate resources to answer their queries by employing a detailed, tree-like questionnaire. Furthermore, automated complex tool cascades ('tasks'), involving resources located on different servers, have been implemented, allowing users to perform comprehensive data analyses without the requirement of further manual intervention for data transfer and re-formatting. Currently, automated cascades for the analysis of regulatory DNA segments as well as for the prediction of protein functional properties are provided.

AB - Summary: The Helmholtz Network for Bioinformatics (HNB) is a joint venture of eleven German bioinformatics research groups that offers convenient access to numerous bioinformatics resources through a single web portal. The 'Guided Solution Finder' which is available through the HNB portal helps users to locate the appropriate resources to answer their queries by employing a detailed, tree-like questionnaire. Furthermore, automated complex tool cascades ('tasks'), involving resources located on different servers, have been implemented, allowing users to perform comprehensive data analyses without the requirement of further manual intervention for data transfer and re-formatting. Currently, automated cascades for the analysis of regulatory DNA segments as well as for the prediction of protein functional properties are provided.

UR - https://www.scopus.com/pages/publications/10744222240

U2 - 10.1093/bioinformatics/btg398

DO - 10.1093/bioinformatics/btg398

M3 - Article

C2 - 14734319

AN - SCOPUS:10744222240

SN - 1367-4803

VL - 20

SP - 268

EP - 270

JO - Bioinformatics

JF - Bioinformatics

IS - 2

ER -

The Helmholtz Network for Bioinformatics: An integrative web portal for bioinformatics resources

Abstract

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