Privacy-preserving multicenter differential protein abundance analysis with FedProt

Burankova, Y. (First Author), Abele, M. (Co-Author), Bakhtiari, M. (Co-Author), von Toerne, C. (Co-Author), Barth, T. K. (Co-Author), Schweizer, L. (Co-Author), Giesbertz, P. (Co-Author), Schmidt, J. R. (Co-Author), Kalkhof, S. (Co-Author), Müller-Deile, J. (Co-Author), van Veelen, P. A. (Co-Author), Mohammed, Y. (Co-Author), Hammer, E. (Co-Author), Arend, L. (Co-Author), Adamowicz, K. (Co-Author), Laske, T. (Co-Author), Hartebrodt, A. (Co-Author), Frisch, T. (Co-Author), Meng, C. (Co-Author) & Matschinske, J. (Co-Author) & 11 others, Späth, J. (Co-Author), Röttger, R. (Co-Author), Schwämmle, V. (Co-Author), Hauck, S. M. (Co-Author), Lichtenthaler, S. F. (Co-Author), Imhof, A. (Co-Author), Mann, M. (Co-Author), Ludwig, C. (Co-Author), Kuster, B. (Co-Author), Baumbach, J. (Co-Author) & Zolotareva, O. (Last Author), 2025, (Accepted/In press) In: Nature Computational Science.

Research output: Contribution to journal › Article › peer-review

Systematic evaluation of normalization approaches in tandem mass tag and label-free protein quantification data using PRONE

Arend, L. (First Author), Adamowicz, K. (Co-Author), Schmidt, J. R. (Co-Author), Burankova, Y. (Co-Author), Zolotareva, O. (Co-Author), Tsoy, O. (Co-Author), Pauling, J. K. (Co-Author), Kalkhof, S. (Co-Author), Baumbach, J. (Co-Author), List, M. (Co-Author) & Laske, T. (Last Author), 2025, In: Briefings in Bioinformatics. 26, 3, bbaf201.

Research output: Contribution to journal › Article › peer-review

Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing

Maier, A. (Shared First Author), Hartung, M. (Shared First Author), Abovsky, M. (Co-Author), Adamowicz, K. (Co-Author), Bader, G. D. (Co-Author), Baier, S. (Co-Author), Blumenthal, D. B. (Co-Author), Chen, J. (Co-Author), Elkjaer, M. L. (Co-Author), Garcia-Hernandez, C. (Co-Author), Helmy, M. (Co-Author), Hoffmann, M. (Co-Author), Jurisica, I. (Co-Author), Kotlyar, M. (Co-Author), Lazareva, O. (Co-Author), Levi, H. (Co-Author), List, M. (Co-Author), Lobentanzer, S. (Co-Author), Loscalzo, J. (Co-Author) & Malod-Dognin, N. (Co-Author) & 20 others, Manz, Q. (Co-Author), Matschinske, J. (Co-Author), Mee, M. (Co-Author), Oubounyt, M. (Co-Author), Pastrello, C. (Co-Author), Pico, A. R. (Co-Author), Pillich, R. T. (Co-Author), Poschenrieder, J. M. (Co-Author), Pratt, D. (Co-Author), Pržulj, N. (Co-Author), Sadegh, S. (Co-Author), Saez-Rodriguez, J. (Co-Author), Sarkar, S. (Co-Author), Shaked, G. (Co-Author), Shamir, R. (Co-Author), Trummer, N. (Co-Author), Turhan, U. (Co-Author), Wang, R. S. (Co-Author), Zolotareva, O. (Co-Author) & Baumbach, J. (Last Author), 5 Jul 2024, In: Nucleic Acids Research. 52, W1, p. W481-W488

Research output: Contribution to journal › Article › peer-review

Meta-analysis of proteomics data from osteoblasts, bone, and blood: Insights into druggable targets, active factors, and potential biomarkers for bone biomaterial design

Schmidt, J. R. (Shared First Author), Adamowicz, K. (Shared First Author), Arend, L. (Shared First Author), Lehmann, J. (Co-Author), List, M. (Co-Author), Poh, P. S. P. (Co-Author), Baumbach, J. (Co-Author), Kalkhof, S. (Co-Author) & Laske, T. (Last Author), 2024, In: Journal of Tissue Engineering. 15

Research output: Contribution to journal › Article › peer-review

Network medicine-based epistasis detection in complex diseases: Ready for quantum computing

Hoffmann, M. (Shared First Author), Poschenrieder, J. M. (Shared First Author), Incudini, M. (Shared First Author), Baier, S. (Shared First Author), Fritz, A. (Shared First Author), Maier, A. (Shared First Author), Hartung, M. (Shared First Author), Hoffmann, C. (Shared First Author), Trummer, N. (Co-Author), Adamowicz, K. (Co-Author), Picciani, M. (Co-Author), Scheibling, E. (Co-Author), Harl, M. V. (Co-Author), Lesch, I. (Co-Author), Frey, H. (Co-Author), Kayser, S. (Co-Author), Wissenberg, P. (Co-Author), Schwartz, L. (Co-Author), Hafner, L. (Co-Author) & Acharya, A. (Co-Author) & 28 others, Hackl, L. (Co-Author), Grabert, G. (Co-Author), Lee, S. G. (Co-Author), Cho, G. (Co-Author), Cloward, M. E. (Co-Author), Jankowski, J. (Co-Author), Lee, H. K. (Co-Author), Tsoy, O. (Co-Author), Wenke, N. (Co-Author), Pedersen, A. G. (Co-Author), Bønnelykke, K. (Co-Author), Mandarino, A. (Co-Author), Melograna, F. (Co-Author), Schulz, L. (Co-Author), Climente-González, H. (Co-Author), Wilhelm, M. (Co-Author), Iapichino, L. (Co-Author), Wienbrandt, L. (Co-Author), Ellinghaus, D. (Co-Author), Van Steen, K. (Co-Author), Grossi, M. (Co-Author), Furth, P. A. (Co-Author), Hennighausen, L. (Co-Author), Di Pierro, A. (Co-Author), Baumbach, J. (Co-Author), Kacprowski, T. (Co-Author), List, M. (Co-Author) & Blumenthal, D. B. (Last Author), 23 Sep 2024, In: Nucleic Acids Research. 52, 17, p. 10144-10160 17 p.

Research output: Contribution to journal › Article › peer-review